Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Hmgxb4 ENSRNOG00000013878

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Description

HMG-box containing 4 [Source:RGD Symbol;Acc:1305783]

Gene Synonyms

Hmg2l1, Hmgb2l1, LOC307667

Location

Primary_assembly 19: 13,370,376-13,409,306 forward strand.

GRCr8:CM070409.1

About this gene

This gene has 5 transcripts (splice variants), 229 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000144216.1	Hmgxb4-205	4176	688aa	ENSRNOP00000098894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000108564.2	Hmgxb4-202	3912	636aa	ENSRNOP00000077395.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y143	-
ENSRNOT00000067519.4	Hmgxb4-201	3853	594aa	ENSRNOP00000061759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A2N0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000122073.1	Hmgxb4-204	3627	485aa	ENSRNOP00000103951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000110845.2	Hmgxb4-203	2622	197aa	ENSRNOP00000079235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQF7	-

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Summary

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