Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Pdlim7 ENSRNOG00000013653

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Description

PDZ and LIM domain 7 [Source:RGD Symbol;Acc:628769]

Gene Synonyms

LMP

Location

Primary_assembly 17: 9,129,525-9,144,956 forward strand.

GRCr8:CM070407.1

About this gene

This gene has 5 transcripts (splice variants), 198 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000132138.1	Pdlim7-205	1973	571aa	ENSRNOP00000106980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000018899.5	Pdlim7-201	1727	464aa	ENSRNOP00000018899.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UJ95	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000095062.2	Pdlim7-202	1673	446aa	ENSRNOP00000093838.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKU2	-
ENSRNOT00000095625.2	Pdlim7-203	1603	423aa	ENSRNOP00000092912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GK07	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000115581.2	Pdlim7-204	1002	222aa	ENSRNOP00000092278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AH90 A6KAR6	-

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Summary

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