Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
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Genetic Variation
- Variant table
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- Structural variants
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Gene: Hmbox1 ENSRNOG00000013326

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Description

homeobox containing 1 [Source:RGD Symbol;Acc:1306787]

Gene Synonyms

LOC305968, RGD1306787

Location

Primary_assembly 15: 43,222,470-43,376,011 reverse strand.

GRCr8:CM070405.1

About this gene

This gene has 5 transcripts (splice variants) and 278 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112734.2	Hmbox1-202	1866	447aa	ENSRNOP00000077167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y5F7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000129024.1	Hmbox1-204	2673	444aa	ENSRNOP00000110153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000173136.1	Hmbox1-205	2601	420aa	ENSRNOP00000105983.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000120015.2	Hmbox1-203	2550	403aa	ENSRNOP00000092747.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJY0	-
ENSRNOT00000038336.8	Hmbox1-201	1576	412aa	ENSRNOP00000029528.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZER1	-

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Summary

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