Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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Gene: Opn5 ENSRNOG00000012689

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Description

opsin 5 [Source:RGD Symbol;Acc:727869]

Gene Synonyms

Gpr136

Location

Primary_assembly 9: 25,865,610-25,913,315 forward strand.

GRCr8:CM070399.1

About this gene

This gene has 2 transcripts (splice variants), 209 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000031759.7	Opn5-201	1625	533aa	ENSRNOP00000030570.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8YD44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000106707.2	Opn5-202	1837	377aa	ENSRNOP00000080812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTV0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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