Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Pde1c ENSRNOG00000012337

.

Description

phosphodiesterase 1C [Source:RGD Symbol;Acc:68332]

Location

Primary_assembly 4: 86,626,282-87,193,259 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 10 transcripts (splice variants), 336 orthologues, 20 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105428.2	Pde1c-205	3183	863aa	ENSRNOP00000078829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZM70	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000121103.1	Pde1c-207	3421	788aa	ENSRNOP00000110688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000118567.2	Pde1c-206	3282	693aa	ENSRNOP00000089783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A8V6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000098186.2	Pde1c-203	2993	751aa	ENSRNOP00000096395.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQQ1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000098034.2	Pde1c-202	2876	624aa	ENSRNOP00000077659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y1F5	-
ENSRNOT00000017531.9	Pde1c-201	2864	708aa	ENSRNOP00000017531.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K105 F1LMX4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000152371.1	Pde1c-209	2819	605aa	ENSRNOP00000105005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKK2	-
ENSRNOT00000102583.2	Pde1c-204	2503	768aa	ENSRNOP00000095937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMU0	-
ENSRNOT00000146532.1	Pde1c-208	2396	716aa	ENSRNOP00000099233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000167670.1	Pde1c-210	2210	665aa	ENSRNOP00000099194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Summary

.

.