Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Clstn3 ENSRNOG00000011156

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Description

calsyntenin 3 [Source:RGD Symbol;Acc:621153]

Gene Synonyms

Cs3, Cstn3

Location

Primary_assembly 4: 157,331,494-157,364,769 reverse strand.

mRatBN7.2:CM026977.1

About this gene

This gene has 3 transcripts (splice variants), 207 orthologues, 2 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000015570.4	Clstn3-201	3019	957aa	ENSRNOP00000015570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7J1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000102207.1	Clstn3-203	2869	954aa	ENSRNOP00000076723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y929	-
ENSRNOT00000096523.1	Clstn3-202	1461	357aa	ENSRNOP00000083803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZY11	-

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Summary

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