Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Lhx9 ENSRNOG00000010357

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Description

LIM homeobox 9 [Source:RGD Symbol;Acc:727956]

Gene Synonyms

MGC156570

Location

Primary_assembly 13: 52,941,210-52,962,266 reverse strand.

GRCr8:CM070403.1

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues, 22 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000139280.1	Lhx9-204	2661	397aa	ENSRNOP00000105014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000101843.2	Lhx9-202	2626	388aa	ENSRNOP00000092128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q80W90-1	-
ENSRNOT00000116473.2	Lhx9-203	2497	387aa	ENSRNOP00000090603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJ04	-
ENSRNOT00000014218.8	Lhx9-201	1825	321aa	ENSRNOP00000014218.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q80W90-2	-

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Summary

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