Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Nipsnap3a ENSRNOG00000010332

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Description

nipsnap homolog 3A (C. elegans) [Source:RGD Symbol;Acc:1583223]

Gene Synonyms

LOC685080

Location

Primary_assembly 5: 72,432,957-72,465,544 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants), 236 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000099213.2	Nipsnap3a-204	1815	276aa	ENSRNOP00000081642.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G695	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000098020.2	Nipsnap3a-203	1728	247aa	ENSRNOP00000086152.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GG78	-
ENSRNOT00000095903.2	Nipsnap3a-202	1604	247aa	ENSRNOP00000088730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5M949	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000107397.2	Nipsnap3a-205	1500	230aa	ENSRNOP00000081717.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTD2	-
ENSRNOT00000013759.7	Nipsnap3a-201	1170	247aa	ENSRNOP00000013759.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5M949	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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