Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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Gene: Msl1 ENSRNOG00000009643

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Description

MSL complex subunit 1 [Source:RGD Symbol;Acc:1564778]

Gene Synonyms

LOC303514, RGD1564778

Location

Primary_assembly 10: 84,251,642-84,261,971 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 3 transcripts (splice variants), 229 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107825.2	Msl1-203	3127	615aa	ENSRNOP00000079028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZM69 A6HIV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000012812.9	Msl1-201	3078	599aa	ENSRNOP00000012812.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HIV1 D3ZBD0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000101887.2	Msl1-202	2034	369aa	ENSRNOP00000095416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6B2K3	-

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Summary

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