Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Rxra ENSRNOG00000009446

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Description

retinoid X receptor alpha [Source:RGD Symbol;Acc:3610]

Location

Primary_assembly 3: 31,388,223-31,474,417 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 245 orthologues, 11 paralogues and is associated with 22 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000012892.6	Rxra-201	4845	511aa	ENSRNOP00000012892.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0VJ96	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000100573.2	Rxra-203	4929	507aa	ENSRNOP00000091257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQ23	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000099288.2	Rxra-202	4819	497aa	ENSRNOP00000087257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A846	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000107435.2	Rxra-204	4604	465aa	ENSRNOP00000087600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GFA6	-

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Summary

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