Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Clasp2 ENSRNOG00000009161

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Description

cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]

Location

Primary_assembly 8: 122,555,524-122,737,587 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 9 transcripts (splice variants), 221 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000117265.2	Clasp2-209	6440	1534aa	ENSRNOP00000078073.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKF9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000113161.2	Clasp2-208	6398	1520aa	ENSRNOP00000095387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMJ1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000091980.3	Clasp2-202	6380	1514aa	ENSRNOP00000071109.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JZM8	-
ENSRNOT00000103269.2	Clasp2-204	6374	1512aa	ENSRNOP00000085148.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZZH0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000107377.2	Clasp2-205	6302	1488aa	ENSRNOP00000083968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZX03	-
ENSRNOT00000100370.2	Clasp2-203	6266	1287aa	ENSRNOP00000095678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GL90	-
ENSRNOT00000111450.2	Clasp2-207	6207	1456aa	ENSRNOP00000095411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMK8	-
ENSRNOT00000111105.2	Clasp2-206	6153	1281aa	ENSRNOP00000076941.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBJ9	-
ENSRNOT00000012545.6	Clasp2-201	5876	1424aa	ENSRNOP00000012545.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UIH1	-

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Summary

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