Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Gpnmb ENSRNOG00000008816

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Description

glycoprotein nmb [Source:RGD Symbol;Acc:71008]

Location

Primary_assembly 4: 79,341,021-79,380,240 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues, 2 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000104789.2	Gpnmb-203	2413	572aa	ENSRNOP00000076498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K0K2 Q6P7C7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000103594.2	Gpnmb-202	2173	539aa	ENSRNOP00000088304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAJ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000011945.6	Gpnmb-201	2146	519aa	ENSRNOP00000011945.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q5B8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000105809.2	Gpnmb-204	1796	524aa	ENSRNOP00000096210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GLH9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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