Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: Nipsnap1 ENSRNOG00000008374

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Description

nipsnap homolog 1 [Source:RGD Symbol;Acc:1310419]

Gene Synonyms

LOC360971

Location

Primary_assembly 14: 83,957,702-83,981,576 forward strand.

GRCr8:CM070404.1

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues, 3 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108106.2	Nipsnap1-204	2087	314aa	ENSRNOP00000089911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALY8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000011158.7	Nipsnap1-201	1826	284aa	ENSRNOP00000011158.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IKI3 G3V728	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000098065.2	Nipsnap1-202	1823	283aa	ENSRNOP00000091044.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAU8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000103839.2	Nipsnap1-203	1720	258aa	ENSRNOP00000083882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZW49	-

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Summary

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