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- Splice variants
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Gene: Sync ENSRNOG00000008118

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Description

syncoilin, intermediate filament protein [Source:RGD Symbol;Acc:1307970]

Gene Synonyms

LOC362606

Location

Primary_assembly 5: 146,916,361-146,943,191 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants) and 226 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115081.2	Sync-202	1792	474aa	ENSRNOP00000090847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ADE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000119345.2	Sync-203	3729	470aa	ENSRNOP00000080080.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSB3 A6ISI1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000010730.6	Sync-201	3291	464aa	ENSRNOP00000010730.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZM91	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000129140.1	Sync-204	2363	473aa	ENSRNOP00000105229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000157828.1	Sync-205	1891	457aa	ENSRNOP00000111372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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