Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Plxnc1 ENSRNOG00000007970

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Description

plexin C1 [Source:RGD Symbol;Acc:1307420]

Gene Synonyms

LOC362873

Location

Primary_assembly 7: 31,276,978-31,431,092 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 3 transcripts (splice variants), 197 orthologues, 8 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106534.2	Plxnc1-203	7794	1759aa	ENSRNOP00000078419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKT8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000011178.8	Plxnc1-201	7307	1574aa	ENSRNOP00000011178.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A7M0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000102613.2	Plxnc1-202	5459	1752aa	ENSRNOP00000081399.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS48	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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