Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Spata6 ENSRNOG00000007568

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Description

spermatogenesis associated 6 [Source:RGD Symbol;Acc:628657]

Gene Synonyms

Hash

Location

Primary_assembly 5: 131,821,585-131,905,014 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 3 transcripts (splice variants), 147 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000094905.2	Spata6-202	2083	454aa	ENSRNOP00000081719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZST2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000010524.6	Spata6-201	2509	430aa	ENSRNOP00000010524.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V704	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000113698.2	Spata6-203	736	176aa	ENSRNOP00000078412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G2Q5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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