Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Shroom1 ENSRNOG00000007431

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Description

shroom family member 1 [Source:RGD Symbol;Acc:1308066]

Gene Synonyms

LOC287285, RGD1308066

Location

Primary_assembly 10: 38,122,500-38,132,435 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 3 transcripts (splice variants), 193 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000113885.2	Shroom1-203	3243	873aa	ENSRNOP00000081463.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000074769.5	Shroom1-201	3135	857aa	ENSRNOP00000066767.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0RB44	-
ENSRNOT00000102961.2	Shroom1-202	3000	792aa	ENSRNOP00000081830.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G6J5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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