Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Smyd1 ENSRNOG00000006776

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Description

SET and MYND domain containing 1 [Source:RGD Symbol;Acc:1305105]

Gene Synonyms

LOC297333

Location

Primary_assembly 4: 104,760,475-104,870,081 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 6 transcripts (splice variants), 285 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009184.7	Smyd1-201	2146	490aa	ENSRNOP00000009184.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IA68 D4A3D2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000094006.2	Smyd1-203	2297	450aa	ENSRNOP00000077690.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YCG5	-
ENSRNOT00000128930.1	Smyd1-206	2223	457aa	ENSRNOP00000101538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000097634.2	Smyd1-204	2206	446aa	ENSRNOP00000093849.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKQ9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000119454.2	Smyd1-205	2053	459aa	ENSRNOP00000086450.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A681	-
ENSRNOT00000093960.2	Smyd1-202	1995	456aa	ENSRNOP00000097130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQZ0	-

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Summary

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