Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Matn2 ENSRNOG00000006060

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Description

matrilin 2 [Source:RGD Symbol;Acc:1305353]

Gene Synonyms

LOC299996

Location

Primary_assembly 7: 67,380,168-67,530,153 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 4 transcripts (splice variants), 195 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000008361.9	Matn2-201	3892	912aa	ENSRNOP00000008361.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LXS3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000100118.2	Matn2-203	3494	911aa	ENSRNOP00000076610.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBE6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000106400.2	Matn2-204	3451	910aa	ENSRNOP00000092408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJR4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000098862.2	Matn2-202	1101	280aa	ENSRNOP00000094117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALH2	-

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Summary

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