Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Rfx1 ENSRNOG00000006049

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Description

regulatory factor X1 [Source:RGD Symbol;Acc:1306574]

Gene Synonyms

LOC288906

Location

Primary_assembly 19: 40,966,102-40,996,809 reverse strand.

GRCr8:CM070409.1

About this gene

This gene has 3 transcripts (splice variants), 257 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000008104.7	Rfx1-201	5122	1286aa	ENSRNOP00000008104.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZQ82	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000097141.2	Rfx1-202	4486	1074aa	ENSRNOP00000080081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZPW7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000108714.2	Rfx1-203	2961	911aa	ENSRNOP00000078002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XWQ1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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