Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Cpsf6 ENSRNOG00000005927

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Description

cleavage and polyadenylation specific factor 6 [Source:RGD Symbol;Acc:1304640]

Gene Synonyms

LOC299811

Location

Primary_assembly 7: 54,842,490-54,873,998 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 2 transcripts (splice variants), 193 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108117.2	Cpsf6-202	7279	588aa	ENSRNOP00000094948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMJ9 A6IGS9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000008193.8	Cpsf6-201	7168	551aa	ENSRNOP00000008193.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IGS7 D3ZPL1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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