Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Ptpn7 ENSRNOG00000005807

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Description

protein tyrosine phosphatase, non-receptor type 7 [Source:RGD Symbol;Acc:708516]

Gene Synonyms

Heptp, Lcptp

Location

Primary_assembly 13: 49,122,609-49,136,094 forward strand.

GRCr8:CM070403.1

About this gene

This gene has 3 transcripts (splice variants), 127 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114746.2	Ptpn7-202	2406	359aa	ENSRNOP00000084393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXS3 A6ICD8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000007833.5	Ptpn7-201	2092	322aa	ENSRNOP00000007833.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P49445	-
ENSRNOT00000155289.1	Ptpn7-203	1413	359aa	ENSRNOP00000103780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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