Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Hacd4 ENSRNOG00000005772

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Description

3-hydroxyacyl-CoA dehydratase 4 [Source:RGD Symbol;Acc:1310339]

Gene Synonyms

LOC362540, Ptplad2, RGD1310339

Location

Primary_assembly 5: 107,934,937-107,962,836 reverse strand.

GRCr8:CM070395.1

About this gene

This gene has 5 transcripts (splice variants), 195 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101049.2	Hacd4-202	1268	254aa	ENSRNOP00000095794.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AU59	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000139632.1	Hacd4-204	1765	237aa	ENSRNOP00000099570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000142010.1	Hacd4-205	1289	247aa	ENSRNOP00000100451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000135679.1	Hacd4-203	1255	226aa	ENSRNOP00000110880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000033651.7	Hacd4-201	933	226aa	ENSRNOP00000034988.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z8V6	-

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Summary

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