Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Nin ENSRNOG00000005540

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Description

ninein [Source:RGD Symbol;Acc:1306492]

Gene Synonyms

LOC100911256, LOC299117

Location

Primary_assembly 6: 94,263,206-94,363,610 reverse strand.

GRCr8:CM070396.1

About this gene

This gene has 5 transcripts (splice variants), 204 orthologues, 1 paralogue and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108786.2	Nin-204	7562	2127aa	ENSRNOP00000088832.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A7B7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000007529.6	Nin-201	6745	2040aa	ENSRNOP00000007529.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A1J7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000103711.2	Nin-203	6393	2058aa	ENSRNOP00000086065.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A538	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000052408.7	Nin-202	6388	2014aa	ENSRNOP00000044897.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZIT3	-
ENSRNOT00000112425.2	Nin-205	4177	1277aa	ENSRNOP00000086179.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A5C4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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