Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Stx16 ENSRNOG00000005281

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Description

syntaxin 16 [Source:RGD Symbol;Acc:1309423]

Gene Synonyms

LOC362283

Location

Primary_assembly 3: 162,853,782-162,882,489 forward strand.

mRatBN7.2:CM026976.1

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues, 12 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000088286.2	Stx16-202	3884	326aa	ENSRNOP00000073268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K528	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000106302.1	Stx16-204	3923	309aa	ENSRNOP00000083230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZW54	-
ENSRNOT00000066279.2	Stx16-201	3851	322aa	ENSRNOP00000062099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z9R7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000095901.1	Stx16-203	1578	287aa	ENSRNOP00000096219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQ84	-

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Summary

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