Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Prpf40a ENSRNOG00000004864

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Description

pre-mRNA processing factor 40 homolog A [Source:RGD Symbol;Acc:1311401]

Gene Synonyms

Fnbp3, LOC295607

Location

Primary_assembly 3: 58,038,042-58,099,363 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095713.2	Prpf40a-202	4251	1016aa	ENSRNOP00000083490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000128758.1	Prpf40a-204	4334	968aa	ENSRNOP00000107993.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000104801.2	Prpf40a-203	3921	870aa	ENSRNOP00000083163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVI3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000006549.7	Prpf40a-201	3806	929aa	ENSRNOP00000006549.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZJ92	-

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Summary

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