Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Sema6d ENSRNOG00000004812

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Description

semaphorin 6D [Source:RGD Symbol;Acc:1310910]

Gene Synonyms

LOC311384

Location

Primary_assembly 3: 132,337,343-132,394,584 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 5 transcripts (splice variants), 206 orthologues, 19 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000090802.3	Sema6d-202	6129	1069aa	ENSRNOP00000070994.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JZC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000109949.2	Sema6d-205	6078	1050aa	ENSRNOP00000093722.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKS5	-
ENSRNOT00000066101.3	Sema6d-201	5874	990aa	ENSRNOP00000062577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HPV2 D3ZDA2	-
ENSRNOT00000098848.2	Sema6d-203	5504	1011aa	ENSRNOP00000082908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVU9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000102426.2	Sema6d-204	4597	1030aa	ENSRNOP00000094338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKL1	-

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Summary

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