Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Cd48 ENSRNOG00000004737

.

Description

Cd48 molecule [Source:RGD Symbol;Acc:620620]

Gene Synonyms

SLAMF2

Location

Primary_assembly 13: 86,717,961-86,742,942 forward strand.

GRCr8:CM070403.1

About this gene

This gene has 4 transcripts (splice variants), 160 orthologues, 10 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000156460.1	Cd48-204	2856	240aa	ENSRNOP00000110512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JG07 P10252	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000121499.1	Cd48-203	2935	227aa	ENSRNOP00000110888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000006306.9	Cd48-201	1618	218aa	ENSRNOP00000006306.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q3B4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000111655.2	Cd48-202	1177	151aa	ENSRNOP00000084304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYW8	-

.

Summary

.

.