Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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ID History
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Gene: Lrriq1 ENSRNOG00000004564

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Description

leucine-rich repeats and IQ motif containing 1 [Source:RGD Symbol;Acc:1564903]

Gene Synonyms

LOC299759, RGD1564903

Location

Primary_assembly 7: 40,070,408-40,296,479 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 6 transcripts (splice variants), 87 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000111314.2	Lrriq1-202	6236	1702aa	ENSRNOP00000077587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZJI9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000071306.4	Lrriq1-201	6209	1701aa	ENSRNOP00000067860.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0RDZ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000148069.1	Lrriq1-204	5370	1664aa	ENSRNOP00000099406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000150529.1	Lrriq1-205	5344	1658aa	ENSRNOP00000100849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000157295.1	Lrriq1-206	5177	1663aa	ENSRNOP00000099182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000145532.1	Lrriq1-203	4788	1550aa	ENSRNOP00000103380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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