Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Prpf39 ENSRNOG00000004521

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Description

pre-mRNA processing factor 39 [Source:RGD Symbol;Acc:1308702]

Gene Synonyms

LOC314171

Location

Primary_assembly 6: 83,088,986-83,113,825 forward strand.

mRatBN7.2:CM026979.1

About this gene

This gene has 2 transcripts (splice variants), 210 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000066702.5	Prpf39-201	2861	664aa	ENSRNOP00000061487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A5S9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000110268.1	Prpf39-202	3084	546aa	ENSRNOP00000077104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5YBM8	-

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Summary

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