Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Fam117a ENSRNOG00000004417

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Description

family with sequence similarity 117, member A [Source:RGD Symbol;Acc:1561062]

Gene Synonyms

LOC497983, RGD1561062

Location

Primary_assembly 10: 80,755,883-80,822,119 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants), 257 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000005939.7	Fam117a-201	2326	452aa	ENSRNOP00000005939.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2QC58 A6HI97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000148524.1	Fam117a-204	2523	428aa	ENSRNOP00000102541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000127117.1	Fam117a-202	2232	420aa	ENSRNOP00000101215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000139593.1	Fam117a-203	2062	314aa	ENSRNOP00000103651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6ID09	-

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Summary

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