Gene: Pcdh19 ENSRNOG00000003929

Description

protocadherin 19 [Source:RGD Symbol;Acc:1565392]

Gene Synonyms

LOC317183, RGD1565392

Location

mRatBN7.2:CM026994.1

About this gene

This gene has 2 transcripts (splice variants), 194 orthologues, 28 paralogues and is associated with 18 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080386.2	Pcdh19-202	6053	1145aa	ENSRNOP00000074621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K8I5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000064458.4	Pcdh19-201	5912	1098aa	ENSRNOP00000062902.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZG18	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary