Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Col1a1 ENSRNOG00000003897

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Description

collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]

Gene Synonyms

COLIA1

Location

Primary_assembly 10: 80,380,453-80,397,460 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 6 transcripts (splice variants), 257 orthologues, 36 paralogues and is associated with 110 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000005311.8	Col1a1-201	5918	1484aa	ENSRNOP00000005311.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P02454	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000115180.2	Col1a1-204	5798	1444aa	ENSRNOP00000081946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G8P4	-
ENSRNOT00000114204.2	Col1a1-202	5798	1444aa	ENSRNOP00000088255.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GG08	-
ENSRNOT00000115096.2	Col1a1-203	5573	1369aa	ENSRNOP00000081061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRN2	-
ENSRNOT00000129545.1	Col1a1-205	5465	1333aa	ENSRNOP00000101678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000149427.1	Col1a1-206	4508	1388aa	ENSRNOP00000101444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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