Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Ccdc85a ENSRNOG00000003374

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Description

coiled-coil domain containing 85A [Source:RGD Symbol;Acc:1311700]

Gene Synonyms

LOC100911414, LOC103690141, LOC289855, RGD1311700

Location

Primary_assembly 14: 106,327,580-106,560,165 reverse strand.

GRCr8:CM070404.1

About this gene

This gene has 7 transcripts (splice variants), 263 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000121697.1	Ccdc85a-205	5635	578aa	ENSRNOP00000104865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000151384.1	Ccdc85a-207	5536	545aa	ENSRNOP00000099034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000081981.3	Ccdc85a-202	5500	533aa	ENSRNOP00000075420.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAJ5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000128515.1	Ccdc85a-206	5380	493aa	ENSRNOP00000103697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000103938.2	Ccdc85a-203	3391	549aa	ENSRNOP00000091651.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJ51	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000056813.4	Ccdc85a-201	3259	505aa	ENSRNOP00000053657.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZMD4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000113987.2	Ccdc85a-204	3124	460aa	ENSRNOP00000086775.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4G3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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