Gene: Ciita ENSRNOG00000002659

Description

class II, major histocompatibility complex, transactivator [Source:RGD Symbol;Acc:619813]

Gene Synonyms

C2ta, Mhc2ta

Location

GRCr8:CM070400.1

About this gene

This gene has 2 transcripts (splice variants), 141 orthologues, 20 paralogues and is associated with 21 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000003572.5	Ciita-201	5304	1156aa	ENSRNOP00000003572.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V6C0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000085310.3	Ciita-202	5076	1073aa	ENSRNOP00000075087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K9Q5 A6K4J5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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