Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Atxn2 ENSRNOG00000001256

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Description

ataxin 2 [Source:RGD Symbol;Acc:1306637]

Gene Synonyms

LOC288663, Sca2

Location

Primary_assembly 12: 40,414,904-40,510,473 reverse strand.

GRCr8:CM070402.1

About this gene

This gene has 7 transcripts (splice variants), 215 orthologues, 1 paralogue and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115112.2	Atxn2-203	4988	1417aa	ENSRNOP00000079599.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRB2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000159226.1	Atxn2-206	5265	1354aa	ENSRNOP00000099398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000131024.1	Atxn2-205	5211	1336aa	ENSRNOP00000112601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000108093.2	Atxn2-202	4819	1387aa	ENSRNOP00000089697.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GHJ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000173364.1	Atxn2-207	4754	1339aa	ENSRNOP00000101057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000115534.2	Atxn2-204	4256	1173aa	ENSRNOP00000095616.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ATU9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000001691.10	Atxn2-201	3700	1054aa	ENSRNOP00000001691.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M049	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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