Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Pde9a ENSRNOG00000001174

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Description

phosphodiesterase 9A [Source:RGD Symbol;Acc:621035]

Location

Primary_assembly 20: 9,471,167-9,564,286 forward strand.

GRCr8:CM070410.1

About this gene

This gene has 7 transcripts (splice variants), 191 orthologues, 20 paralogues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000001559.9	Pde9a-201	2060	534aa	ENSRNOP00000001559.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8QZV1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000165087.1	Pde9a-207	2239	523aa	ENSRNOP00000100376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000107659.2	Pde9a-203	1982	508aa	ENSRNOP00000094685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALK2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000110944.2	Pde9a-204	1941	512aa	ENSRNOP00000097325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASG7	-
ENSRNOT00000131269.1	Pde9a-206	1927	492aa	ENSRNOP00000110403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000114987.2	Pde9a-205	1814	452aa	ENSRNOP00000080744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRE7	-
ENSRNOT00000095394.2	Pde9a-202	1536	377aa	ENSRNOP00000095194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AL01	-

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Summary

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