Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Psap ENSRNOG00000000571

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Description

prosaposin [Source:RGD Symbol;Acc:3423]

Gene Synonyms

SGP-1, SGP1A

Location

Primary_assembly 20: 28,757,181-28,783,421 forward strand.

GRCr8:CM070410.1

About this gene

This gene has 6 transcripts (splice variants), 228 orthologues, 2 paralogues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000000696.7	Psap-201	2566	557aa	ENSRNOP00000000696.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K3W9 Q6P7A4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000163815.1	Psap-206	2920	504aa	ENSRNOP00000106490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000093802.2	Psap-202	2479	553aa	ENSRNOP00000086321.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1Z1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000104593.2	Psap-203	2461	518aa	ENSRNOP00000096557.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASQ4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000135879.1	Psap-205	2431	510aa	ENSRNOP00000108599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000128039.1	Psap-204	2413	522aa	ENSRNOP00000111640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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