Transcript: ENSPTRT00000062132.4 HOXD8-201

Description

homeobox D8 [Source:VGNC Symbol;Acc:VGNC:1967]

Location

About this transcript

This transcript has 2 exons, is annotated with 23 domains and features and maps to 331 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000062132.4	HOXD8-201	2578	289aa	ENSPTRP00000054685.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VSU1 K6Z9A9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000109048.1	HOXD8-202	561	186aa	ENSPTRP00000073217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S868 A0A6D2Y8Z1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 2,578 bps, Translation length: 289 residues

Version

ENSPTRT00000062132.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.