Transcript: ENSPTRT00000033314.3 PATR-DMB-201

Description

major histocompatibility complex, class II, DM beta [Source:NCBI gene (formerly Entrezgene);Acc:449592]

Gene Synonyms

MHC-DMB

Location

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features and maps to 1120 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000033314.3	PATR-DMB-201	2097	263aa	ENSPTRP00000030778.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A663D8M8 H2QSS0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101346.1	PATR-DMB-202	774	257aa	ENSPTRP00000068853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RVV6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,097 bps, Translation length: 263 residues

Version

ENSPTRT00000033314.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.