Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CBX1 ENSPTRG00000052115

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Description

chromobox 1 [Source:NCBI gene (formerly Entrezgene);Acc:468431]

Location

Chromosome 17: 9,728,350-9,767,344 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000092281.1	CBX1-201	807	268aa	ENSPTRP00000085060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T736	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000083692.1	CBX1-202	2194	185aa	ENSPTRP00000064546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XIL6 G2HHR4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000100337.1	CBX1-203	1081	185aa	ENSPTRP00000076665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XIL6 G2HHR4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000097215.1	CBX1-204	441	146aa	ENSPTRP00000084068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4B5	-

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Summary

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