Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
- Variant table
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- Structural variants
Gene expression
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External references
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ID History
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Gene: ATPAF1 ENSPTRG00000043035

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Description

ATP synthase mitochondrial F1 complex assembly factor 1 [Source:VGNC Symbol;Acc:VGNC:57560]

Location

Chromosome 1: 46,250,646-46,284,167 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 6 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106922.1	ATPAF1-201	2039	351aa	ENSPTRP00000083009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XTR0 K7CCF1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000091284.1	ATPAF1-202	1835	283aa	ENSPTRP00000065964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RMU7 A0A6D2WJS2	-
ENSPTRT00000107783.1	ATPAF1-203	1685	240aa	ENSPTRP00000074698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCD7 A0A6D2XGX0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000083251.1	ATPAF1-204	1008	335aa	ENSPTRP00000091780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TS30	-
ENSPTRT00000086578.1	ATPAF1-206	795	264aa	ENSPTRP00000076097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SHX4	-
ENSPTRT00000083186.1	ATPAF1-205	729	242aa	ENSPTRP00000080023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SSK7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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