Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ATN1 ENSPTRG00000040559

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Description

atrophin 1 [Source:NCBI gene (formerly Entrezgene);Acc:451803]

Gene Synonyms

DRPLA

Location

Chromosome 12: 7,248,341-7,266,062 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 4 transcripts (splice variants), 186 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000076137.2	ATN1-202	3675	1224aa	ENSPTRP00000060554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RGA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000109887.1	ATN1-201	4445	1187aa	ENSPTRP00000085649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JEG8 A0A6D2XGM0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000008509.3	ATN1-203	1253	126aa	ENSPTRP00000007862.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W0P3 H2Q5B8	-
ENSPTRT00000103209.1	ATN1-204	291	96aa	ENSPTRP00000080636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUJ8	-

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Summary

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