Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Gene: USF3 ENSPTRG00000030159

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Description

upstream transcription factor family member 3 [Source:VGNC Symbol;Acc:VGNC:14245]

Location

Chromosome 3: 116,771,428-116,813,917 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 2 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000058190.4	USF3-202	7326	2240aa	ENSPTRP00000051156.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R838	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000099105.1	USF3-201	267	88aa	ENSPTRP00000080614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUH9 A0A6D2WCG7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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