Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SSC5D ENSPTRG00000023746

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Description

scavenger receptor cysteine rich family member with 5 domains [Source:VGNC Symbol;Acc:VGNC:10272]

Location

Chromosome 19: 57,902,351-57,932,553 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 2 transcripts (splice variants), 394 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000111416.1	SSC5D-202	4722	1573aa	ENSPTRP00000072210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S5D8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000021454.5	SSC5D-201	2856	951aa	ENSPTRP00000019798.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XVS4 H2QH68	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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