Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAMTA2 ENSPTRG00000023129

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Description

calmodulin binding transcription activator 2 [Source:VGNC Symbol;Acc:VGNC:9163]

Location

Chromosome 17: 5,180,109-5,200,207 reverse strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 6 transcripts (splice variants), 187 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000087616.1	CAMTA2-203	4569	1223aa	ENSPTRP00000067256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7B4I1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000102797.1	CAMTA2-201	4781	1201aa	ENSPTRP00000092464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTA1 A0A6D2XXS5	-
ENSPTRT00000042902.5	CAMTA2-202	4590	1207aa	ENSPTRP00000046817.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y3Q5 H2R4A7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000110314.1	CAMTA2-204	3594	1197aa	ENSPTRP00000071447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S4E4 A0A6D2W0S1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000111407.1	CAMTA2-205	3564	1187aa	ENSPTRP00000084128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4H1	-
ENSPTRT00000109388.1	CAMTA2-206	999	332aa	ENSPTRP00000063886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RGR8	-

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Summary

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