Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXC6 ENSPTRG00000022997

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Description

homeobox C6 [Source:VGNC Symbol;Acc:VGNC:13140]

Location

Chromosome 12: 35,746,582-35,760,496 reverse strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 2 transcripts (splice variants), 214 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000009259.5	HOXC6-201	1561	235aa	ENSPTRP00000008561.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YC04 H2Q635	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000009260.3	HOXC6-202	2059	153aa	ENSPTRP00000008562.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WTR5 H2Q636	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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