Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX3 ENSPTRG00000021546

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Description

LIM homeobox 3 [Source:VGNC Symbol;Acc:VGNC:4779]

Location

Chromosome 9: 114,551,241-114,560,121 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 3 transcripts (splice variants), 198 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000092546.1	LHX3-201	2427	402aa	ENSPTRP00000063429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFI1 A0A6D2XXL9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000106794.1	LHX3-202	2364	397aa	ENSPTRP00000067701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSP0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000039923.4	LHX3-203	1161	386aa	ENSPTRP00000036892.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VS39 H2QY60	-

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Summary

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