Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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ID History
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Gene: GTF3C5 ENSPTRG00000021506

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Description

ral transcription factor IIIC subunit 5 [Source:VGNC Symbol;Acc:VGNC:8893]

Location

Chromosome 9: 111,292,298-111,320,130 forward strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 4 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000090229.1	GTF3C5-202	2106	528aa	ENSPTRP00000084661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T600	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000078818.1	GTF3C5-201	2440	526aa	ENSPTRP00000091388.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XY90 K7D7A7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000056099.3	GTF3C5-203	1374	457aa	ENSPTRP00000048749.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WPI3 H2R649	-
ENSPTRT00000078058.1	GTF3C5-204	1038	345aa	ENSPTRP00000074266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SBB1 A0A6D2Y128	-

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Summary

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