Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PBX3 ENSPTRG00000021374

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Description

PBX homeobox 3 [Source:VGNC Symbol;Acc:VGNC:10448]

Location

Chromosome 9: 103,830,523-104,055,042 forward strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 4 transcripts (splice variants), 105 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000085407.1	PBX3-201	1368	455aa	ENSPTRP00000067180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RS88 A0A6D2W2U3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000039536.6	PBX3-202	1305	434aa	ENSPTRP00000048940.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WWM1 K7DG78	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000088217.1	PBX3-204	1191	396aa	ENSPTRP00000063242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFU0	-
ENSPTRT00000097040.1	PBX3-203	1056	351aa	ENSPTRP00000088832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3THW7 A0A6D2W5L7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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